Wiki
Web 2.0 technologies (e.g., blogs, social networks, and wikis) are increasingly being used by medical schools and postgraduate training programs as tools for information dissemination. These technologies offer the unique opportunity to track metrics of user engagement and interaction.
Wiki History in Medicine
2003
Wikipedia concept, which has developed as a result of the open-source software model using free (wiki) software (www.wikipedia.org/wiki/Medicine). The essential features are a revision control system, unrestricted editing of articles on the wiki by any registered member, unrestricted membership of the wiki, and the ability to fork articles (or see current versions at the same time). In addition, no copies are deleted and the newer versions of an article comprise the original article with all additions made cumulatively. 1).
2005
The Medical Informatics communities should consider a more systematic use of these techniques for disseminating knowledge about the specialty for the public as well as for internal and educational purposes 2).
Maier et al. developed WikiGene, a Wiki-based curation tool that allows revision of the data by expert users over the Internet. LitMiner (http://andromeda.gsf.de/litminer) and WikiGene (http://andromeda.gsf.de/wiki) can be used unrestricted with any Internet browser 3).
These tools enable the team members to share knowledge simply and quickly-the collective knowledge base of the group can be efficiently managed and navigated 4).
BioLingua is an interactive, web-based programming environment that enables biologists to analyze biological systems by combining knowledge and data through direct end-user programming 5).
Do your students wiki? 6).
Wiki's wild world 7).
Internet encyclopaedias go head to head 8).
2006
The server (http://2dx.org) provides the electron crystallography community with a central information exchange platform, which is structured in blog and Wiki form, allowing visitors to add comments or discussions. It currently offers a detailed step-by-step introduction to image processing with the MRC software program. The server is also a repository for the 2dx software package, a user-friendly image processing system for 2D membrane protein crystals 9).
The gene finding server is accessible via https://www.cebitec.uni-bielefeld.de/groups/brf/software/reganor/cgi-bin/reganor_upload.cgi. The server software is available with the GenDB genome annotation system (version 2.2.1 onwards) under the GNU general public license. The software can be downloaded from https://sourceforge.net/projects/gendb/. More information on installing GenDB and REGANOR and the system requirements can be found on the GenDB project page http://www.cebitec.uni-bielefeld.de/groups/brf/software/wiki/GenDBWiki/AdministratorDocumentation/GenDBInstallation 10).
Wiki and other ways to share learning online 11).
Gene and protein nomenclature in public databases 12).
Wiki ware could harness the Internet for science 13).
Gene-function wiki would let biologists pool worldwide resources 14).
2007
Desai et al. described the pilot use of an enterprise wiki solution to facilitate group communication, secure file sharing, and collaborative writing within a pediatric hospital and research center. We discuss the choice of software, examples of use, and initial user feedback. We conclude that a wiki is a low-cost and high-yield approach to enhance research collaboration 15).
Catalyzing chemical bonding–the WIKI way 16).
TABASCO: A single molecule, base-pair resolved gene expression simulator 17).
Mass spectrometry and Web 2.0 18)
Stochastic simulation GUI for biochemical networks 19).
BioPP: a tool for web-publication of biological networks 20).
Globus MEDICUS - federation of DICOM medical imaging devices into healthcare Grids 21).
Other riffs on cooperation are already showing how well a wiki could work 22).
Key biology databases go wiki 23).
Legal pathways for cross-border research: building a legal platform for biomedical academia 24).
Genome re-annotation: a wiki solution? 25).
SNP2NMD: a database of human single nucleotide polymorphisms causing nonsense-mediated mRNA decay 26).
2008
An explorative learning approach to teaching clinical anatomy using student generated content 27).
Balancing entrepreneurship and business practices for e-collaboration: responsible information sharing in academic research 28).
The RNA WikiProject: community annotation of RNA families 29).
Using a wiki to meet graduate nursing education competencies in collaboration and community health 30).
Putting wikis to work in libraries 31).
Search extension transforms Wiki into a relational system: a case for flavonoid metabolite database 32).
Big data: open-source format needed to aid wiki collaboration 33).
A new, dynamic resource for both students and teachers of family medicine: the Family Medicine Research wiki at FMDRL 34).
TRANSDAB Wiki database 35).
A wiki for the life sciences where authorship matters 36).
BioJava: an open-source framework for bioinformatics 37).
The medical matters wiki: building a library Web site 2.0 38).
Orthochina.org: case-based orthopaedic Wiki project in China 39).
Hodis E, Prilusky J, Martz E, Silman I, Moult J, Sussman JL. Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules. Genome Biol. 2008;9(8):R121. doi: 10.1186/gb-2008-9-8-r121. Epub 2008 Aug 3. PubMed PMID: 18673581; PubMed Central PMCID: PMC2575511.
Huss JW 3rd, Orozco C, Goodale J, Wu C, Batalov S, Vickers TJ, Valafar F, Su AI. A gene wiki for community annotation of gene function. PLoS Biol. 2008 Jul 8;6(7):e175. doi: 10.1371/journal.pbio.0060175. PubMed PMID: 18613750; PubMed Central PMCID: PMC2443188.
Pickard WF. Modelling the swelling assay for aquaporin expression. J Math Biol. 2008 Dec;57(6):883-903. doi: 10.1007/s00285-008-0196-9. Epub 2008 Jun 28. PubMed PMID: 18587542.
Dinov ID, Christou N, Sanchez J. Central Limit Theorem: New SOCR Applet and Demonstration Activity. J Stat Educ. 2008 Jul 1;16(2):1-15. PubMed PMID: 21833159; PubMed Central PMCID: PMC3152447.
Stokes TH, Torrance JT, Li H, Wang MD. ArrayWiki: an enabling technology for sharing public microarray data repositories and meta-analyses. BMC Bioinformatics. 2008 May 28;9 Suppl 6:S18. doi: 10.1186/1471-2105-9-S6-S18. PubMed PMID: 18541053; PubMed Central PMCID: PMC2423441.
Pawlicki S, Le Béchec A, Delamarche C. AMYPdb: a database dedicated to amyloid precursor proteins. BMC Bioinformatics. 2008 Jun 10;9:273. doi: 10.1186/1471-2105-9-273. PubMed PMID: 18544157; PubMed Central PMCID: PMC2442844.
Mons B, Ashburner M, Chichester C, van Mulligen E, Weeber M, den Dunnen J, van Ommen GJ, Musen M, Cockerill M, Hermjakob H, Mons A, Packer A, Pacheco R, Lewis S, Berkeley A, Melton W, Barris N, Wales J, Meijssen G, Moeller E, Roes PJ, Borner K, Bairoch A. Calling on a million minds for community annotation in WikiProteins. Genome Biol. 2008;9(5):R89. doi: 10.1186/gb-2008-9-5-r89. Epub 2008 May 28. PubMed PMID: 18507872; PubMed Central PMCID: PMC2441475.
Wang X. miRDB: a microRNA target prediction and functional annotation database with a wiki interface. RNA. 2008 Jun;14(6):1012-7. doi: 10.1261/rna.965408. Epub 2008 Apr 21. PubMed PMID: 18426918; PubMed Central PMCID: PMC2390791.
Kabachinski J. The word for quick is wiki-wiki. Biomed Instrum Technol. 2008 Mar-Apr;42(2):119-21. doi: 10.2345/0899-8205(2008)42[119:TWFQIW]2.0.CO;2. PubMed PMID: 18397129.
Harris ST, Zeng X. Using wiki in an online record documentation systems course. Perspect Health Inf Manag. 2008 Jan 30;5:1. PubMed PMID: 18311325; PubMed Central PMCID: PMC2242345.
Fung IC. Open access for the non-English-speaking world: overcoming the language barrier. Emerg Themes Epidemiol. 2008 Jan 4;5:1. doi: 10.1186/1742-7622-5-1. PubMed PMID: 18173854; PubMed Central PMCID: PMC2268932.
Karolchik D, Kuhn RM, Baertsch R, Barber GP, Clawson H, Diekhans M, Giardine B, Harte RA, Hinrichs AS, Hsu F, Kober KM, Miller W, Pedersen JS, Pohl A, Raney BJ, Rhead B, Rosenbloom KR, Smith KE, Stanke M, Thakkapallayil A, Trumbower H, Wang T, Zweig AS, Haussler D, Kent WJ. The UCSC Genome Browser Database: 2008 update. Nucleic Acids Res. 2008 Jan;36(Database issue):D773-9. Epub 2007 Dec 17. PubMed PMID: 18086701; PubMed Central PMCID: PMC2238835.
2009
Flórez LA, Roppel SF, Schmeisky AG, Lammers CR, Stülke J. A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki. Database (Oxford). 2009;2009:bap012. Epub 2009 Sep 17. PubMed PMID: 20157485; PubMed Central PMCID: PMC2790307.
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16: Lammers CR, Flórez LA, Schmeisky AG, Roppel SF, Mäder U, Hamoen L, Stülke J. Connecting parts with processes: SubtiWiki and SubtiPathways integrate gene and pathway annotation for Bacillus subtilis. Microbiology. 2010 Mar;156(Pt 3):849-59. doi: 10.1099/mic.0.035790-0. Epub 2009 Dec 3. PubMed PMID: 19959575.
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21: McKeon M. Harnessing the web information ecosystem with wiki-based visualization dashboards. IEEE Trans Vis Comput Graph. 2009 Nov-Dec;15(6):1081-8. doi: 10.1109/TVCG.2009.148. PubMed PMID: 19834175.
22: Wang XB, Wu LY, Wang YC, Deng NY. Prediction of palmitoylation sites using the composition of k-spaced amino acid pairs. Protein Eng Des Sel. 2009 Nov;22(11):707-12. doi: 10.1093/protein/gzp055. Epub 2009 Sep 25. PubMed PMID: 19783671.
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27: Molander L, Gerstrand M, Rudén C. WikiPharma - a freely available, easily accessible, interactive and comprehensive database for environmental effect data for pharmaceuticals. Regul Toxicol Pharmacol. 2009 Dec;55(3):367-71. doi: 10.1016/j.yrtph.2009.08.009. Epub 2009 Aug 29. PubMed PMID: 19720105.
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29: Skinner ME, Uzilov AV, Stein LD, Mungall CJ, Holmes IH. JBrowse: a next-generation genome browser. Genome Res. 2009 Sep;19(9):1630-8. doi: 10.1101/gr.094607.109. Epub 2009 Jul 1. PubMed PMID: 19570905; PubMed Central PMCID: PMC2752129.
30: Nielsen FA. Lost in localization: a solution with neuroinformatics 2.0? Neuroimage. 2009 Oct 15;48(1):11-3. doi: 10.1016/j.neuroimage.2009.05.073. Epub 2009 Jun 2. PubMed PMID: 19497377.
31: Joppa LN. Journal club. An ecologist calls for a citizen-science 'Wiki'. Nature. 2009 Jun 4;459(7247):619. doi: 10.1038/459619e. PubMed PMID: 19494869.
32: Phair L. The development of the West Sussex institutional care neglect risk assessment tool: a reflective analysis using Mezirow's transformative learning framework. Int J Older People Nurs. 2009 Jun;4(2):132-41. doi: 10.1111/j.1748-3743.2009.00166.x. PubMed PMID: 20925813.
33: Razumovitch J, de França K, Kehl F, Wiki M, Meier W, Vebert C. Optimal hybridization efficiency upon immobilization of oligonucleotide double helices. J Phys Chem B. 2009 Jun 18;113(24):8383-90. doi: 10.1021/jp902383m. PubMed PMID: 19469563.
34: Hoehndorf R, Bacher J, Backhaus M, Gregorio SE Jr, Loebe F, Prüfer K, Uciteli A, Visagie J, Herre H, Kelso J. BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology. BMC Bioinformatics. 2009 May 6;10 Suppl 5:S5. doi: 10.1186/1471-2105-10-S5-S5. PubMed PMID: 19426462; PubMed Central PMCID: PMC2679405.
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37: Kardong-Edgren SE, Oermann MH, Ha Y, Tennant MN, Snelson C, Hallmark E, Rogers N, Hurd D. Using a wiki in nursing education and research. Int J Nurs Educ Scholarsh. 2009;6:Article6. doi: 10.2202/1548-923X.1787. Epub 2009 Mar 8. PubMed PMID: 19341356.
38: Manthous CA. Why not physician-assisted death? Crit Care Med. 2009 Apr;37(4):1206-9. PubMed PMID: 19326573.
39: Lau AS. Implementation of an onto-wiki toolkit using web services to improve the efficiency and effectiveness of medical ontology co-authoring and analysis. Inform Health Soc Care. 2009 Jan;34(1):73-80. doi: 10.1080/17538150902779543. PubMed PMID: 19306201.
40: Friend S, Schadt E. Something wiki this way comes. Interview by Bryn Nelson. Nature. 2009 Mar 5;458(7234):13. doi: 10.1038/458013a. PubMed PMID: 19262635.
41: Dinov ID, Christou N, Gould R. Law of Large Numbers: the Theory, Applications and Technology-based Education. J Stat Educ. 2009 Mar;17(1):1-19. PubMed PMID: 21603584; PubMed Central PMCID: PMC3095954.
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44: Hannemann J, Poorter H, Usadel B, Bläsing OE, Finck A, Tardieu F, Atkin OK, Pons T, Stitt M, Gibon Y. Xeml Lab: a tool that supports the design of experiments at a graphical interface and generates computer-readable metadata files, which capture information about genotypes, growth conditions, environmental perturbations and sampling strategy. Plant Cell Environ. 2009 Sep;32(9):1185-200. doi: 10.1111/j.1365-3040.2009.01964.x. Epub 2009 Feb 19. PubMed PMID: 19236607.
45: Cobus L. Using blogs and wikis in a graduate public health course. Med Ref Serv Q. 2009 Spring;28(1):22-32. doi: 10.1080/02763860802615922. PubMed PMID: 19197741.
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2019
Warner JL, Smith J, Wright A. It's Time to Wikify Clinical Documentation: How Collaborative Authorship Can Reduce the Burden and Improve the Quality of the Electronic Health Record. Acad Med. 2019 May;94(5):645-650. doi: 10.1097/ACM.0000000000002613. PubMed PMID: 30681451.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4763388/
Wiki is a web page whose content can be edited in real-time using a web browser.
Wiki technology offers a number of potential benefits for administrators, students and instructors, including the ability to share information online, to construct knowledge together, to facilitate collaboration and to enable social learning and peer feedback.
Rasmussen et al. believed that with proper planning and instructional design, wiki technology can be usefully employed in medical education. Theuy intended to continue to study the impact of wiki technology in there own programme, and encouraged others to evaluate the application of wiki technology in other areas of medical education.
Cox SR. Technology to enhance in-class discussions and student participation at a multi-campus program. Curr Pharm Teach Learn. 2019 Jul;11(7):719-722. doi: 10.1016/j.cptl.2019.03.010. Epub 2019 Mar 23. PubMed PMID: 31227095.
Schmidt S, Mau W. [Development of a Rehab-Wiki for rehabilitation-Related Educational Materials Assigned to Competence-Based Learning Objectives]. Rehabilitation (Stuttg). 2019 Apr;58(2):128-135. doi: 10.1055/a-0847-7344. Epub 2019 Feb 22. German. PubMed PMID: 30795025.